Running the nf-gwas Nextflow pipeline: Lessons learned from a biologist

In this tutorial, Johanna summarizes her experiences from zero command line knowledge to running a genome-wide association study in no time. The overall goal of this tutorial is to get started with the nf-gwas pipeline without prior knowledge of Nextflow. Have fun!

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Table of contents

• Introduction
• Pipeline Overview
• Mastering the basic tasks
• Running the pipeline
• What to do with errors
• Conclusion
• Table 1 - Command Line Tools to run your GWAS